Scaffold Ga0098038_1002672

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0098038_1002672

Scaffold Ga0098038_1002672

Overview

Basic Information
Taxon OID	3300006735 Open in IMG/M
Scaffold ID	Ga0098038_1002672 Open in IMG/M
Source Dataset Name	Marine viral communities from the Subarctic Pacific Ocean - 5B_ETSP_OMZ_AT15132_CsCl metaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	7561
Total Scaffold Genes	16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	13 (81.25%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Associated Families	3

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location Name	Pacific Ocean
Coordinates	Lat. (^o)	-12.999	Long. (^o)	-80.801	Alt. (m)		Depth (m)	30
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F049286	Metagenome / Metatranscriptome	147	Y
F056143	Metagenome	138	N
F100996	Metagenome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0098038_100267211	F056143	AGGAG	VGKMSDWSIQLEEDFWDVANKVIGGCEYLGQFMQEMEPHRDWLGTRDKNDYADMLREAWDNYWSDKQ*
Ga0098038_100267213	F100996	N/A	MEHLNSYQKLDWISFAIQEAMNGNSGELDMALLLVEQLRENETNKETNL*
Ga0098038_10026728	F049286	AGGAG	MPKFEVTRSYSVSCVTTVEADTYEHAEEVALNSEDVYWKEYDGDYDAEITVEQVDDV*

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