Scaffold Ga0098038_1004989

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0098038_1004989

Scaffold Ga0098038_1004989

Overview

Basic Information
Taxon OID	3300006735 Open in IMG/M
Scaffold ID	Ga0098038_1004989 Open in IMG/M
Source Dataset Name	Marine viral communities from the Subarctic Pacific Ocean - 5B_ETSP_OMZ_AT15132_CsCl metaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	5435
Total Scaffold Genes	14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	11 (78.57%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (100.00%)
Associated Families	4

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location Name	Pacific Ocean
Coordinates	Lat. (^o)	-12.999	Long. (^o)	-80.801	Alt. (m)		Depth (m)	30
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000720	Metagenome / Metatranscriptome	923	Y
F003020	Metagenome / Metatranscriptome	513	Y
F009812	Metagenome	312	Y
F011410	Metagenome	291	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0098038_10049893	F003020	AGGAG	MPDIANFKSVSVSVDTHEKLRSLAKNRFEVPVSVQKVIEFLLEKEIKKRNGRSNGKSRG*
Ga0098038_10049896	F011410	AGG	MKDLKVKIEWQTSDILVWVVLSIGIGLCIVNFVTIYNIYDVIETMWLEIQQVKETNISLHQFIEEHKDDFN*
Ga0098038_10049897	F000720	GAGG	MTLTKENDKVRRQIPNRMPSATFTLPIDGRRVVGIVNYDVTDTGIIPMAFWVKLKPTDSYLDRELRASGKLISRCLQNNESLKDLVDTLSQDNVIGQMANYLYKNMEDIIMGKQPEKKQRELSTDPYAMKE*
Ga0098038_10049899	F009812	GGAG	MDIVDEFEIEWIPEDTGAPYEVDECFHEVPEHTIDKMCKSKFGHTNWVRMGQMTPADLVGNPCEFDYTNGVIYFKNEILV*

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