Basic Information | |
---|---|
Taxon OID | 3300006735 Open in IMG/M |
Scaffold ID | Ga0098038_1006775 Open in IMG/M |
Source Dataset Name | Marine viral communities from the Subarctic Pacific Ocean - 5B_ETSP_OMZ_AT15132_CsCl metaG |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
---|---|
Scaffold Length (bps) | 4627 |
Total Scaffold Genes | 15 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 14 (93.33%) |
Novel Protein Genes | 6 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 6 (100.00%) |
Associated Families | 6 |
Taxonomy | |
---|---|
All Organisms → Viruses → Predicted Viral | (Source: DeepVirFinder) |
Source Dataset Ecosystem |
---|
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico |
Source Dataset Sampling Location | ||||||||
---|---|---|---|---|---|---|---|---|
Location Name | Pacific Ocean | |||||||
Coordinates | Lat. (o) | -12.999 | Long. (o) | -80.801 | Alt. (m) | Depth (m) | 30 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F004493 | Metagenome | 436 | Y |
F006217 | Metagenome | 378 | Y |
F018289 | Metagenome | 236 | Y |
F027536 | Metagenome | 194 | Y |
F029594 | Metagenome | 188 | Y |
F052260 | Metagenome / Metatranscriptome | 143 | N |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0098038_100677510 | F018289 | GGAGG | MADFTRQQLNTIRKQMQNALNVFADKTDIEIEVGNCSYRGGEATFKVKVLMEGAKTREQQDLEFYAELHKLDLTKIAKLMGEDMSLVGYKARAKKKPYVLQRLRDGAEFVADQNIVEKFYKKEEVNAE* |
Ga0098038_100677512 | F052260 | AGGAGG | MFVILATKPLNDGTKGFRFNFFGKKGIIRQRKLQSNGIKFTKGQCMNAYHFGKTTVYTEKSSNTTTGRKFRHVAG* |
Ga0098038_10067753 | F027536 | GGAGG | MRVSPDGWRYKVIPIDRVINDCKRRADDAWWDGNDDEARLHEQEQKLYELDKEEGILWVPNF* |
Ga0098038_10067755 | F006217 | AGGA | MIEILLAMVEEQNPIHKYCMDKHEHWTGRAACVQELRHAQRKMEVERLRQFLKDNPHYKYPGMALPNGAIKPLDVCWGSDKTYYIGSDKVKRSKC* |
Ga0098038_10067758 | F029594 | GAGG | MLPDEMEAEKNRKLLLSQADTIEILKRNVRDLQGQLNQAQIRITELKKDEV* |
Ga0098038_10067759 | F004493 | AGAAGG | MQNSVTKNNALDFDDEQWSQLINSNGLLIMWFIEWNKKVEEGKRLQYYQTLQIQDFFKLKYNQSAGCDPWHMKDSKISLDGKFVSEGDDDLEPYFLINTDDGVGYIYPYAFVALPTKSGGHHIVRMD* |
⦗Top⦘ |