Basic Information | |
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Taxon OID | 3300006735 Open in IMG/M |
Scaffold ID | Ga0098038_1007728 Open in IMG/M |
Source Dataset Name | Marine viral communities from the Subarctic Pacific Ocean - 5B_ETSP_OMZ_AT15132_CsCl metaG |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 4311 |
Total Scaffold Genes | 20 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 19 (95.00%) |
Novel Protein Genes | 7 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 7 (100.00%) |
Associated Families | 7 |
Taxonomy | |
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All Organisms → Viruses → Predicted Viral | (Source: DeepVirFinder) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico |
Source Dataset Sampling Location | ||||||||
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Location Name | Pacific Ocean | |||||||
Coordinates | Lat. (o) | -12.999 | Long. (o) | -80.801 | Alt. (m) | Depth (m) | 30 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F008925 | Metagenome | 326 | Y |
F012581 | Metagenome | 279 | N |
F013187 | Metagenome | 273 | Y |
F023319 | Metagenome | 210 | N |
F060436 | Metagenome | 133 | N |
F064207 | Metagenome | 129 | Y |
F105336 | Metagenome | 100 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0098038_100772810 | F105336 | AGGAG | VKLRQQQITRVEQILSDLERKVEEMEQQDYMTFDLGKDLQNISYMLDVLREELKK* |
Ga0098038_100772814 | F013187 | AGGAG | MPTKAKKKIKKKPKITWGWIYGDECPELWEHFGFPHPDPDDRMKLKFVKYESKEMQSG* |
Ga0098038_100772815 | F012581 | AGGAG | VARFTLYAKKVYYYRKEINARDRKTAEKRGDQYESERLFIPTGEEFYITSIEENEDVNQDN* |
Ga0098038_100772816 | F008925 | AGGAG | MSTKTIKPKIDTVTLNLINKLKAIDDTINEGAWEYVHLGDIIRLQDAFHTTINHFDLKKKGGIGEHGADEGKYTQFWHSDYVCHTDPEAYDPSKVEEDDEYIYICCRGIHL* |
Ga0098038_100772819 | F023319 | GAGG | MSKKIKCQREGCSNEAYPEDMENGASNLLLCDDCYTEIRYLLADYLDIHIQDIKI* |
Ga0098038_10077284 | F060436 | GAGG | MSRYNQINIEHFANLVKDLKINLLTQKEFDNAVEELYMAIFRHNTKGEYVIETMPSDKTNWKVYRPTQTKEEALLIIKGGKHE* |
Ga0098038_10077287 | F064207 | AGGAG | MQFNDREKLILDFLKDNNVDIEEVIDVIIKANGFVGVGLVRLQEIMIDAVKKHFKQESLDKIMNG* |
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