NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0098038_1015503

Scaffold Ga0098038_1015503


Overview

Basic Information
Taxon OID3300006735 Open in IMG/M
Scaffold IDGa0098038_1015503 Open in IMG/M
Source Dataset NameMarine viral communities from the Subarctic Pacific Ocean - 5B_ETSP_OMZ_AT15132_CsCl metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2942
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (90.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)-12.999Long. (o)-80.801Alt. (m)Depth (m)30
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000302Metagenome / Metatranscriptome1337Y
F003357Metagenome / Metatranscriptome492N
F004368Metagenome / Metatranscriptome441Y
F007531Metagenome / Metatranscriptome349Y
F065936Metagenome / Metatranscriptome127Y

Sequences

Protein IDFamilyRBSSequence
Ga0098038_101550310F065936AGGAGMTPEQGFGMLAVGMVVLAIAGTILYVTLNTIETNRIKREQEKKAREKIHGLD*
Ga0098038_10155032F000302GGAGGMVAVMSQDTKDRIAEMERQKIDLENQLELLGYSGNLVKMHQIEEEIYEIEDTIRKLLP*
Ga0098038_10155033F007531AGGAGMFKKIEKQILEFAKDTGLTERREIVHGTLYVKLHEEKECDHFHKVIRTFYKDQINKEGGVNMYAVGDEFAFDFVPEDREAPVFSDEEYSGKEGMMPDDIDKGIWSEFAEEEMFNNMPDDVDTLLNLEAESKRGK*
Ga0098038_10155034F003357AGGGGGMTRNSWIVKQIYTDAKNNLGWLFKGILLAGGFVAGIKLLMFFSVPKEIVFPVMWIAFILVMTYKWYSMKYDWKKDDKAYDRASKRYMNKIKGGK*
Ga0098038_10155039F004368GGAGGMTGTRLTDIVFDRQEDHLYEDARAMRLTPYVMSERCLQVEMSNIYQDYKSADYDTLCSILGEGFKGYHKMDSSELIEEYKAIEDQWYDLYEASWLEFTPCEEDPIHKLEEEKV*
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.