NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0098038_1016733

Scaffold Ga0098038_1016733


Overview

Basic Information
Taxon OID3300006735 Open in IMG/M
Scaffold IDGa0098038_1016733 Open in IMG/M
Source Dataset NameMarine viral communities from the Subarctic Pacific Ocean - 5B_ETSP_OMZ_AT15132_CsCl metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2826
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (33.33%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Nitrospirae → Thermodesulfovibrionia → Thermodesulfovibrionales → Thermodesulfovibrionaceae → Thermodesulfovibrio(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)-12.999Long. (o)-80.801Alt. (m)Depth (m)30
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016882Metagenome / Metatranscriptome244Y
F054361Metagenome140Y
F077944Metagenome117Y
F092866Metagenome107Y

Sequences

Protein IDFamilyRBSSequence
Ga0098038_10167333F092866GGAMGFHKRYINDEQVIDIYRNNGCQAVIDWYQKGTDAVILSGELAETVHTLMNILEHDHERGWNRISETIANASIKKGFKN*
Ga0098038_10167334F054361N/AMGYVNNTAAYDQKKVRKYGKLYGSIDFEINDSISEHYFENNEKPVVGKLHIGNKTFDVTYQELDMIQRTLGTAKDTVNRKYKMGMMR*
Ga0098038_10167336F077944N/AMREEIKKERIKKRVLKDHPKAYVDHDGNGYKIMVGDKYIAEDYFLPDTHDLDKAWEYAALACKTTQNFNRSHPDRMDLSEKEGKYHRINKRKRRGRRAK*
Ga0098038_10167338F016882N/AMAYYVAKVKIATDTPKGVKWQSESYLVDALTVTHAEALVNEDFKDDGVEFEVKSVSKSQICKVIESSTKNS*
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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