NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0098038_1028157

Scaffold Ga0098038_1028157


Overview

Basic Information
Taxon OID3300006735 Open in IMG/M
Scaffold IDGa0098038_1028157 Open in IMG/M
Source Dataset NameMarine viral communities from the Subarctic Pacific Ocean - 5B_ETSP_OMZ_AT15132_CsCl metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2105
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (75.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)-12.999Long. (o)-80.801Alt. (m)Depth (m)30
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000720Metagenome / Metatranscriptome923Y
F009812Metagenome312Y
F011410Metagenome291Y
F023621Metagenome209Y

Sequences

Protein IDFamilyRBSSequence
Ga0098038_10281573F009812AGGAGMDEFEIEWIPEDTGAPYEAVDPLIDIPSHTIDKLCKKKFGHTNWARMGQMTPEELVGNPHEFDYENGVIYFENAYMV*
Ga0098038_10281574F000720AGGAGVTLIKENTKVRKEIPNRMMSATFALPIDGRRVVGILDYIASDTGLTPMAFWIKLKPTDSYLDRELRASGKLISRCMQHGESLKDLVDTLSQDNMVGQMANYLHKNMEDIIMGKKPDKKQRELSTDPYAMKE*
Ga0098038_10281575F011410AGGAGMKDLSMKLEWSTSNLLVWTVLGVGIGLCIVNLVTIYNIYSVIETMWLEIQQVKEVNISLYQFIEEHKGDFN*
Ga0098038_10281576F023621AGGAGMSLLEKRMDNILKAMREAKDYEMKSIWNRKLQELFKIRERRAYERLEHEARMVH*
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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