Basic Information | |
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Taxon OID | 3300006735 Open in IMG/M |
Scaffold ID | Ga0098038_1065811 Open in IMG/M |
Source Dataset Name | Marine viral communities from the Subarctic Pacific Ocean - 5B_ETSP_OMZ_AT15132_CsCl metaG |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 1289 |
Total Scaffold Genes | 6 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 4 (66.67%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (75.00%) |
Associated Families | 4 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico |
Source Dataset Sampling Location | ||||||||
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Location Name | Pacific Ocean | |||||||
Coordinates | Lat. (o) | -12.999 | Long. (o) | -80.801 | Alt. (m) | Depth (m) | 30 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F008925 | Metagenome | 326 | Y |
F023319 | Metagenome | 210 | N |
F029779 | Metagenome | 187 | Y |
F070656 | Metagenome | 123 | N |
Protein ID | Family | RBS | Sequence |
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Ga0098038_10658111 | F029779 | N/A | YEELCEALVGIDATERYTHEDILSYVYNLKDTEEKFYDNKK* |
Ga0098038_10658112 | F008925 | AGGAG | MTTKSKPKIDAVTLDLINKLKAIQDTVNEGAWEYVHLGDIIRLQDAFETAITHFDLKKKGGIGEYGDDKGKYTEFWHSDYVCHTDPEAYDPSKVEEDLND* |
Ga0098038_10658114 | F070656 | AGGA | MSKEILKAVREASISIACCLDEPSEVTKKDLEHIQDQITKIENYLTPFYLEELEEIKDE* |
Ga0098038_10658115 | F023319 | AGGAG | MSRKIKCQRCKTNKAYPEDMENRASNLLLCDDCYTELRYLMADYLDIHIQEIKI* |
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