NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0098033_1003074

Scaffold Ga0098033_1003074


Overview

Basic Information
Taxon OID3300006736 Open in IMG/M
Scaffold IDGa0098033_1003074 Open in IMG/M
Source Dataset NameMarine viral communities from the Subarctic Pacific Ocean - 1_ETSP_OMZ_AT15124 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6108
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (70.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)-13.003Long. (o)-80.809Alt. (m)Depth (m)275
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003161Metagenome504N
F007893Metagenome / Metatranscriptome343Y
F022755Metagenome213N

Sequences

Protein IDFamilyRBSSequence
Ga0098033_10030742F007893N/AMAEAFGTQFKVTGPVFDGSGLRVMQGIVNRGLLDIATFEGANKIKDDLWGPPAHLYWQSFHPNKPETRHGAHTRDLKRRVSASRPADNLAVVDAGGLSYAAKVERKYHMFKKAHNAIERNKAALLDQYIGDALVEAFQ*
Ga0098033_10030743F003161GGAGGVSRSGALDRIDVLLSTITDPAFTAVIRAEPLALSGTPVLAYWVQGRTNGWQTLGDIGSTTTIMVRAYFRVQASADVRESVELELWDSRVEVDTKLRSDANLDGNCTDSTVGAATVATMDMGGSYYRTATIPFEIQIYGDVTISP*
Ga0098033_10030748F022755N/AMAGSNGVQTQTRAGYRIPEKTARITFDGTDYDGAEILVRLNVSFRHYVTLREAAEGNDQARMAELFGGEVLMSWNLEDASGAPVPANGDGMLQIPLTLAMLIVQHWVEAVADVPAPLSETSADISTLAAASTVTGIR*
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