Scaffold Ga0098037_1002317

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0098037_1002317

Scaffold Ga0098037_1002317

Overview

Basic Information
Taxon OID	3300006737 Open in IMG/M
Scaffold ID	Ga0098037_1002317 Open in IMG/M
Source Dataset Name	Marine viral communities from the Subarctic Pacific Ocean - 5_ETSP_OMZ_AT15132 metaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	8409
Total Scaffold Genes	14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	11 (78.57%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location Name	Pacific Ocean
Coordinates	Lat. (^o)	-12.999	Long. (^o)	-80.801	Alt. (m)		Depth (m)	90
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F060052	Metagenome	133	Y
F105365	Metagenome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0098037_100231710	F105365	AGGAG	MLNYNLNNPTPFIKKYISKNNHIINKYTDLLFSDPTTTSSPQWNSLPPLTQKLAFELSLYKLENGSDFYL*
Ga0098037_100231711	F060052	GGAG	MSKLQQHYINFQSQPTIPHKILYLQKFQNELSQYNINVNNLINSYTTNQWPWNQPKTDND

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