NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0098037_1029459

Scaffold Ga0098037_1029459


Overview

Basic Information
Taxon OID3300006737 Open in IMG/M
Scaffold IDGa0098037_1029459 Open in IMG/M
Source Dataset NameMarine viral communities from the Subarctic Pacific Ocean - 5_ETSP_OMZ_AT15132 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2027
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (81.82%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)-12.999Long. (o)-80.801Alt. (m)Depth (m)90
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006217Metagenome378Y
F015102Metagenome / Metatranscriptome257Y
F027536Metagenome194Y
F029123Metagenome189Y

Sequences

Protein IDFamilyRBSSequence
Ga0098037_102945910F015102N/AMPVNDDDATQDKNTPFDDVSHWAGKLSGKNTDSSKRVDKRSTWRKVKSNFLSKELGVETKRKD*
Ga0098037_10294596F006217GGAGMLELLLAMVEDTNQIQKYCMSKHDHWTGRAACVQELRQTQRKMEVERLRQFLKENPHYRYPGMALPNGKIKPLDVCWGSSRTYGTNKERIC*
Ga0098037_10294597F029123AGGAMSYEVWFGQNGNWFGYHSFKYRMDAVRYELRYLKMFPKLTVEIRRREHAS*
Ga0098037_10294598F027536AGGAGGMLVSKVTPIDRVINDCKRRADDAWWDGNEDEARLHEQEQKLYEKDKEEGVLWVPNF*
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