NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0098035_1163701

Scaffold Ga0098035_1163701


Overview

Basic Information
Taxon OID3300006738 Open in IMG/M
Scaffold IDGa0098035_1163701 Open in IMG/M
Source Dataset NameMarine viral communities from the Subarctic Pacific Ocean - 3_ETSP_OMZ_AT15126 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)752
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)-13.003Long. (o)-80.809Alt. (m)Depth (m)135
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010690Metagenome / Metatranscriptome300Y
F068931Metagenome / Metatranscriptome124Y

Sequences

Protein IDFamilyRBSSequence
Ga0098035_11637011F010690N/AQIFGQAQIANTVAPLMAMALHYSTTPPNRPEHFYHKPDSESSFTTATTTSGQSFTINDGMWCEDLYVSAFTAVYTVSQSLSGYGEFSSNDFGNSLPLKVPLQPGGAGLGSVGTQGTLQLASYHNTHMPMKTSCKINTAFTNDVTQTGNTSFVMGVGYTKQ*
Ga0098035_11637012F068931N/AMPHLEERPALIKPVYDVSNYGEDSILPLNCLSGSTVTLTPSTATFVQVEEDSKIPIDEVNMFIMDSDKMAGISAGDDTDYDETFQ
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Institute for Fundamental Biomedical Research
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