NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0098035_1237251

Scaffold Ga0098035_1237251


Overview

Basic Information
Taxon OID3300006738 Open in IMG/M
Scaffold IDGa0098035_1237251 Open in IMG/M
Source Dataset NameMarine viral communities from the Subarctic Pacific Ocean - 3_ETSP_OMZ_AT15126 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)602
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Eukaryota(Source: Euk_MAG)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)-13.003Long. (o)-80.809Alt. (m)Depth (m)135
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015531Metagenome254N
F047631Metagenome149Y

Sequences

Protein IDFamilyRBSSequence
Ga0098035_12372512F015531AGGMKKIEAMKKDKEIKAMYKVYKTAFKGKDSFDLYVKNLSEFFRITMDIYISGYTGVPKGCGKGPKGNGEWGRADAIKYWADKCNIKYKDINKYFYSVDEVSAYS*
Ga0098035_12372513F047631N/AMRYKFKIQEENKEIEEKEGMSYKKTLKSLVTPNPKWTGWIAY

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