Scaffold Ga0101797

Basic Information
Taxon OID	3300006744 Open in IMG/M
Scaffold ID	Ga0101797_1000399 Open in IMG/M
Source Dataset Name	Human supragingival plaque microbial communities from NIH, USA - visit 2, subject 158256496
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300006744 Open in IMG/M

Scaffold ID

Ga0101797_1000399 Open in IMG/M

Source Dataset Name

Human supragingival plaque microbial communities from NIH, USA - visit 2, subject 158256496

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	14762
Total Scaffold Genes	23 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	22 (95.65%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	6 (100.00%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

14762

Total Scaffold Genes

23 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

22 (95.65%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

6 (100.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: IMG/M)

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Oral Cavity → Supragingival Plaque → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Source Dataset Ecosystem

Host-Associated → Human → Digestive System → Oral Cavity → Supragingival Plaque → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Source Dataset Sampling Location
Location Name	USA: Maryland: Natonal Institute of Health
Coordinates	Lat. (^o)	39.0042816	Long. (^o)	-77.1012173	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Maryland: Natonal Institute of Health

Coordinates

Lat. (^o)

39.0042816

Long. (^o)

-77.1012173

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F018385	Metagenome	235	Y
F027205	Metagenome	195	N
F043991	Metagenome	155	N
F067847	Metagenome	125	N
F071329	Metagenome	122	N
F081456	Metagenome	114	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0101797_100039911	F071329	AGGA	MLPVAKIIISGLSSIGAGMIASRLTKPIVSNSSGIAKILLWFGSVGTGIAASAIVAREVEKQFDETVKAVNEARDHIEIED*
Ga0101797_100039912	F018385	GGAG	MAEHVNRWDPYKELSIEKDRDPVLDDPIIYGVNVPHFTVTVYSPDGRVNKYWNARILQDQVGNCRIACPRDGKILCFNWFKWTSYMFTHDGMNEVVFMPDSRRRIVSKLSFDHVPMKEVN
Ga0101797_100039919	F067847	AGGA	MFSHIIRVRGVFDDEPTTKKLYFHMSRREMFDFIKRYDNVTNFEKWLQAAIDNEDLYTMMKFFDDLIGTSYGERQGERFVKSEQIKESFLNSPEYEELFDQLMDNPSLVREFYNGILPEKIMKQVKEDPKYKELDSKLKETELNNL*
Ga0101797_100039923	F081456	AGGAG	MFEEPPIYYILISLIFLIVFGAISFATWLVWLTNVAFFAKLVVTAIGFLLCAMTVILYTISAE*
Ga0101797_10003996	F027205	AGGA	VASRLIVSADDIMRAVKESEEFERKALAEARKRDRADGKTPREVLHPDHKPGREIVLDYIKNPERRRTPRCSVRLEKRTANNSYRFVVDVSQVRNRELADEIEKDLFAFMDYLLDEYDIPRRIRK*
Ga0101797_10003999	F043991	AGGAG	MSKKNPSVINYFDLNGDLNEEAYEFEDVKLEEYIDKRSNIKPTWVGKYSHQLHFDLADDTEVSFYKGLGIVYADINFPNGIRTILFKCRQKKNLTRFISRVLELAQGDSSNIHPDFRA*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0101797_1000399

Overview

Ecosystem & Geography

Associated Families

Sequences