Scaffold Ga0098042

Basic Information
Taxon OID	3300006749 Open in IMG/M
Scaffold ID	Ga0098042_1000058 Open in IMG/M
Source Dataset Name	Marine viral communities from the Subarctic Pacific Ocean - 9_ETSP_OMZ_AT15188 metaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300006749 Open in IMG/M

Scaffold ID

Ga0098042_1000058 Open in IMG/M

Source Dataset Name

Marine viral communities from the Subarctic Pacific Ocean - 9_ETSP_OMZ_AT15188 metaG

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	35210
Total Scaffold Genes	58 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	27 (46.55%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (25.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

35210

Total Scaffold Genes

58 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

27 (46.55%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (25.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location Name	Pacific Ocean
Coordinates	Lat. (^o)	-14.198	Long. (^o)	-77.499	Alt. (m)	Depth (m)	38
Location on Map

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Source Dataset Sampling Location

Location Name

Pacific Ocean

Coordinates

Lat. (^o)

-14.198

Long. (^o)

-77.499

Alt. (m)

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F001215	Metagenome	746	Y
F008401	Metagenome	334	Y
F060451	Metagenome	133	Y
F098268	Metagenome	104	N

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0098042_10000582	F060451	AGCAG	MNSSEHISVGLTLEDEFTLTRIKNDAHELRGKERDQYLWNRIVRLICRERAYKYVVDELGVVVDPNIGVFEELED*
Ga0098042_10000584	F008401	N/A	MASQNLLTIAQTAELLNCSAGFVRKRISLTESRQPGGWPKHTYVNLQPNGAKSLFRVDKDALQDFLKSEAQIESVETAEATVGEETPTCTTGTCSF*
Ga0098042_10000587	F098268	N/A	MPWHEKFRPEVNLKDFSILYDYNYASMWTRWRRGYELFMYTNQALVGLNYTFRYAMNGQAGSGGTEIPGLMYMYPSTEQDMGMRMVVIRPRDSINLLDLGLSIKSVFNFDLLNKVIGVELSSNFGPPVSDMTGELVSDRFQADGTPKTTYGNYTVVAVGTKAGGPQVPTGAADLDTLFLSVSEEKSFTTIEDKSFASPAFGNPQVGEFLSTAMRFGCNCPDYLNREDFNLYKYAQKKTYPYTGTQDLKPGTYDAGTNTFDGERPVDTRDFPGFVRDFGFLYTKNLFLGPATGGDGPGTSYSDPNLLFFQPKFCKHIYASWWDMQNRFENYKYLDAFLQQPTDEPMDGRYREYFEIQLGKQTRFLQTARSLNWWEAYSPARDTVPDHVLYSDMNPTMVKVLNFDTLASGVSVPLVPSGFVMFDIDEFNPLQPVPPENRPIIDGGQYFNGSPSGVSGTIIYDGGTYLNGAPLPPLFSPIINGGTY*
Ga0098042_10000588	F001215	N/A	MVDRPFLRGAKITSATPTVDAVNTQFANLIQLVRVGDVPSEDAAIVEDIFVVSNEGYPDDGGVRAAAFGLYVYLPNQAAPATAASILLNKFTVGLSGSTEGLIQRVELPKTIAPTPQVGDTALTRPIELGGAEALYLEKGYVLGVGYLGDSALAVSGGLSPSGVSFWAQGGFY*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0098042_1000058

Overview

Ecosystem & Geography

Associated Families

Sequences