NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0098042_1000093

Scaffold Ga0098042_1000093


Overview

Basic Information
Taxon OID3300006749 Open in IMG/M
Scaffold IDGa0098042_1000093 Open in IMG/M
Source Dataset NameMarine viral communities from the Subarctic Pacific Ocean - 9_ETSP_OMZ_AT15188 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)29940
Total Scaffold Genes49 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)35 (71.43%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)-14.198Long. (o)-77.499Alt. (m)Depth (m)38
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003361Metagenome / Metatranscriptome492Y
F005819Metagenome / Metatranscriptome389Y
F006940Metagenome / Metatranscriptome361Y
F089558Metagenome / Metatranscriptome109N

Sequences

Protein IDFamilyRBSSequence
Ga0098042_100009310F003361AGGMKFTINGALDLSKSINSQSIFNKRSLETFNKLGQELKRESKDRLRLPPSPSSKSKKSTGKTRDSIFVAKLSNTNRLRMSTGIKLASDSRTAIFLHGKPIFRSFRPVKRTKPFFPPYQKGSSLAQWAARGTPKLNAFLVARAISRRGLKMKPFIGGTVFENQKKIKKDLDKMMNNIAKDIARSIK*
Ga0098042_100009317F005819N/AMDYLDNLHIPFPHQQQIGESNIDYKRFVYYKDLGAKRSLKKVSEFFGVTDRRIEQISSKNHWVDRIHAINKVENEQIISTVLSYVGETARDLAEEIKPVIFNIISEISEKDLRQMNPTELKGLLDVCYKIIAQIYGIGSPQVQVTNVEYPQINFKWDWEQDGDTDY*
Ga0098042_100009340F089558N/AMDSLEEFQNKHGRNTGQFASQRYILDNSDARSIFIEIAEEAKEKYISDTIAAQYLVLNFEHFKHLSYNTVRRYFRDYRDGLLK*
Ga0098042_10000935F006940AGGAGMKRLKLDDISNPPALKTQEVELKQWDKSVVVQGLTKADTVEINELSENEDGIRDDVLFEKYLILKGMIDPELDSLEDVNNFYTKATPQLIDQILIGIYKCMAWTKEDQANIADQFRE*
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