NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0098042_1002423

Scaffold Ga0098042_1002423


Overview

Basic Information
Taxon OID3300006749 Open in IMG/M
Scaffold IDGa0098042_1002423 Open in IMG/M
Source Dataset NameMarine viral communities from the Subarctic Pacific Ocean - 9_ETSP_OMZ_AT15188 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6747
Total Scaffold Genes15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)13 (86.67%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)-14.198Long. (o)-77.499Alt. (m)Depth (m)38
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008925Metagenome326Y
F012581Metagenome279N
F062830Metagenome130N
F070211Metagenome123Y

Sequences

Protein IDFamilyRBSSequence
Ga0098042_100242312F008925AGGAGMTNKSKPKINAVTLNLINKLKAIDDTINEGAWEYIHLGDILRLQDAFQEAINHYDLKKKGGIGEYGADEGKYTQFYHSDYVCHTDPEAFDPSKVEEDLND*
Ga0098042_100242314F062830AGGAGMQYRIYRHPEGIGLNGKEFAVDDKKDVILFNTVNDAEKFLIKAIGKKATRVELEDNYGLHIEENIEEDEDGR*
Ga0098042_100242315F012581AGGAGMSKYTLYAKKVYYYRKDINAQDMKSAEKRGADYEADDNAERLFESSGEEFYITSIEENEDAV*
Ga0098042_10024237F070211AGGAGMYDPVFINLLEKNVKDLQEQLRNANIRIKQLNDENYKLRRQIGIERDDGRKLTNSSDGVWLGDAEMPDAEHVKKDFKTGG*
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