NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0098042_1002632

Scaffold Ga0098042_1002632


Overview

Basic Information
Taxon OID3300006749 Open in IMG/M
Scaffold IDGa0098042_1002632 Open in IMG/M
Source Dataset NameMarine viral communities from the Subarctic Pacific Ocean - 9_ETSP_OMZ_AT15188 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6467
Total Scaffold Genes17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (35.29%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)-14.198Long. (o)-77.499Alt. (m)Depth (m)38
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015933Metagenome / Metatranscriptome251Y
F023483Metagenome / Metatranscriptome210Y
F028800Metagenome / Metatranscriptome190Y
F066151Metagenome127Y

Sequences

Protein IDFamilyRBSSequence
Ga0098042_100263212F028800N/AMNKIEIIDGHDGFEREVTGTYNLDGNNVYEWELYTYDGLTSIYFKDAEADFSLEDEDDMEQIGLTEEEGERIFDEILDFVNDNGYSFIGEEFE*
Ga0098042_100263214F023483N/AMNKLHLSIADVTKIYGEALEHETGMPVNNLANVFDYDGYRLNYDSLADNIIIKILGAYVQFEMEDTDITCINNNDGKGWFFAY*
Ga0098042_10026325F015933N/AMKTKENLEAGMYFSFKKTFRSYTNDVYNIETSKDGYMTLHRHHCHSKTGEYIPVDLVTVRRIGENSLDYYKYDMFGKKTRGRIHYNSIDSFFYAKKAKDGKEYTHIEKCPIPGIDAIAV*
Ga0098042_10026326F066151N/AMSNEKQLVGWELVHFLMQRFNMTEDEALQNLAENIGNVELNK*
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Institute for Fundamental Biomedical Research
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