NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0098042_1014031

Scaffold Ga0098042_1014031


Overview

Basic Information
Taxon OID3300006749 Open in IMG/M
Scaffold IDGa0098042_1014031 Open in IMG/M
Source Dataset NameMarine viral communities from the Subarctic Pacific Ocean - 9_ETSP_OMZ_AT15188 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2453
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (83.33%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)-14.198Long. (o)-77.499Alt. (m)Depth (m)38
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008925Metagenome326Y
F012581Metagenome279N
F013187Metagenome273Y
F021207Metagenome220Y
F105326Metagenome100Y

Sequences

Protein IDFamilyRBSSequence
Ga0098042_101403110F008925AGGAGMTNKSKPTIDTVTLNLINKLKKIDDTINEGAWEYIHLGDIIRFQDAFQEAISHYDLKKEGGIHDYGANQGKYQEFWHSDYVCWSDPNAFDPSKVEEEDDE*
Ga0098042_10140314F021207GGAGGMSKRFKQVNIQQFAILVQEVDISKYSQEEYVDIIEEIYMTIFRHNTNGDYVIPTMPNEEGNWKVHKSSATKEEVMELIKGGRVIWNKDVI*
Ga0098042_10140315F105326GGAGGMEQRRNLTPREHWELHQSLWHMLGCDMQLKYRDRTTAVYVDNKAKLKYTYSTKGFIKWFPIPKEDKI*
Ga0098042_10140317F013187N/AMTLQNGRGRKEMPTKAKIKKKPKRNTWVYIYGDEFQEIFEHFGFDFPNPDDRIKLKFVKYETREMQDG*
Ga0098042_10140318F012581GGAGMAKYTLYAKKVYYYRKEITAQDSKSAEKRGADYEADDNAERLFEPSGEEFYITSIEESDDGR*
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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