NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0098042_1026370

Scaffold Ga0098042_1026370


Overview

Basic Information
Taxon OID3300006749 Open in IMG/M
Scaffold IDGa0098042_1026370 Open in IMG/M
Source Dataset NameMarine viral communities from the Subarctic Pacific Ocean - 9_ETSP_OMZ_AT15188 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1674
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (87.50%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)-14.198Long. (o)-77.499Alt. (m)Depth (m)38
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005813Metagenome / Metatranscriptome389Y
F006217Metagenome378Y
F027536Metagenome194Y
F029123Metagenome189Y
F048640Metagenome148N

Sequences

Protein IDFamilyRBSSequence
Ga0098042_10263701F027536GGAGGMRVSPDGWRYKVTPIDRVINDCKRRADDAWWDGNDDEAKLHEQEQKLYELDKEEGILWVPNF*
Ga0098042_10263702F029123AGGAGMSYEVWFGKDGKWFGYHSFKHRMEAVACELKYLKIFRDLTVEIRRREHAS*
Ga0098042_10263703F006217GGAMIELLLAMVEEQNPIHKYCMDKHEHWTGRAACVQELRHAQRKMEVEELRQFLKENPHYRYPGMALPNGRIKPLDVCWGSDKTYYIGSDKQKRSKC*
Ga0098042_10263704F005813GAGGMKLYKNSDGVWAGTQADARKMCGKDYSTVDVPTDKPSLLEFLNLHQVGSFTSNGKEEIASEPNTYDKKAMSWFRWAHDCMCRGQYEDAKEMLRKGLIDDRTTTSDG*
Ga0098042_10263706F048640GGAGMQPKELNGHARCKHKPTLIQKQLECRLFGKTFRSVADAAREYELYPSTAYQWHHEGKYRETFPKTKRWDKWRTKHEVADTHTTN*
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Institute for Fundamental Biomedical Research
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