Scaffold Ga0098058_1012557

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0098058_1012557

Scaffold Ga0098058_1012557

Overview

Basic Information
Taxon OID	3300006750 Open in IMG/M
Scaffold ID	Ga0098058_1012557 Open in IMG/M
Source Dataset Name	Marine viral communities from the Subarctic Pacific Ocean - 19_ETSP_OMZ_AT15317 metaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	2526
Total Scaffold Genes	6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (66.67%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae → Rhodospirillaceae bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location Name	Pacific Ocean
Coordinates	Lat. (^o)	-16.21	Long. (^o)	-76.61	Alt. (m)		Depth (m)	105
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F060042	Metagenome	133	Y
F096069	Metagenome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0098058_10125572	F096069	AGG	MVKIEMNFDPNLGNVNNDFSILPDAIMLLTADAIEQTALDVKADVSGEMFQAWPQGVASDRKLKQSVEVDEFRELSNGFVRYTVGTTVPYAHHIEYGTNPHSATTGDGEFMRSIIEWTDRVLGYGPAMANAIAKNIRRKGIQPRPYFRRAVVRQAPNFKRTWALMLAERLEADLKSSLSAGDFTSHSGRKA*
Ga0098058_10125573	F060042	AGGAG	MKHCRKCSLSAMSVHILSSGFCQECQSELEWKNAPRIHKQQMERKARIQYYEKGEEYVKKKWKEKYGDDDVDTVRGYNG*

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