NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0098040_1138742

Scaffold Ga0098040_1138742


Overview

Basic Information
Taxon OID3300006751 Open in IMG/M
Scaffold IDGa0098040_1138742 Open in IMG/M
Source Dataset NameMarine viral communities from the Subarctic Pacific Ocean - 7_ETSP_OMZ_AT15161 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)721
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)-11.499Long. (o)-81.405Alt. (m)Depth (m)120
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000659Metagenome / Metatranscriptome952Y
F031252Metagenome / Metatranscriptome183Y
F063067Metagenome / Metatranscriptome130Y

Sequences

Protein IDFamilyRBSSequence
Ga0098040_11387421F031252GGAGMYKMKSFKQYLREFAVQSTSDYVFDVPSGHSGSLKIPISGPMFKRIWPDTIRSTVFHVTDHAGL
Ga0098040_11387422F000659AGAAGMIRFKQYLKEVNSKYIVAKNPSDKKWYAMGHVGSNKWMPVSSGFKNKAQAQKWAKSQDKVDIAARGEMGDV*
Ga0098040_11387423F063067N/AGKEKSLIIKDYIDGMEKIMKKHSKVLGSLLTDYTKKRIQEPDPDSGDRPMWDELVVNNFKIKKVHIGPEFGPDFEDDDDIDGFPFELYQDTGDMADYITRTVQKIKL*
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