Scaffold Ga0098048

Basic Information
Taxon OID	3300006752 Open in IMG/M
Scaffold ID	Ga0098048_1000243 Open in IMG/M
Source Dataset Name	Marine viral communities from the Subarctic Pacific Ocean - 13_ETSP_OMZ_AT15268 metaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300006752 Open in IMG/M

Scaffold ID

Ga0098048_1000243 Open in IMG/M

Source Dataset Name

Marine viral communities from the Subarctic Pacific Ocean - 13_ETSP_OMZ_AT15268 metaG

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	27961
Total Scaffold Genes	37 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	5 (13.51%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

27961

Total Scaffold Genes

37 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

5 (13.51%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

0 (0.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location Name	Pacific Ocean
Coordinates	Lat. (^o)	-14.509	Long. (^o)	-76.198	Alt. (m)	Depth (m)	48
Location on Map

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Source Dataset Sampling Location

Location Name

Pacific Ocean

Coordinates

Lat. (^o)

-14.509

Long. (^o)

-76.198

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015734	Metagenome / Metatranscriptome	252	Y
F019756	Metagenome / Metatranscriptome	228	Y
F037986	Metagenome / Metatranscriptome	167	N
F047377	Metagenome / Metatranscriptome	150	Y
F050011	Metagenome	146	N
F074154	Metagenome	120	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0098048_100024315	F050011	N/A	MNVSLEIFSDHIKPYLLQTVAICTDRKIIRKGKLRIFQIKQHYAKLTLEDEVRTRIYEIPYPFEITKQGSKTILCYKLSKLLNFGDLDLQVKFLDSSKKSKIYNENLYIMPLHEVDL*
Ga0098048_100024316	F015734	N/A	MIIQRVALDSLLLKNVCEVRFVRRRPRAGDSPARRMLCTKSYELLNSVNGRVTLNYAPPRGPKKINEAAENVLVVWDILMQDYRTINMNSCDLIQQIPDKDFWEYFNENIYPMSPEQKFNFMNS*
Ga0098048_100024317	F019756	N/A	MAQRSIDTLATQKHLIDLSPNSEGDVGLSDEYELTMIFDDILLVEYVDDNETGEIQRNGIFVPTNALTKAWRRAKVILAGPNAEYTKPGDIVIFPNNLGVTVANIDVNGSTIKRGIFLNEDRLFGICKIKDDNSKSSS*
Ga0098048_100024318	F074154	N/A	MNFFQLQNKLFYSNKSKQPEPLDSEGEQAFVPFLFNRWLTMYSKDTVGFVNETLNKYCGIFDTDKQKTYQMYYNLIPRLKFKRISYIKKVKKDKEKQDETDQLKMIAKNKNMSVRELEIYKNMLD*
Ga0098048_10002436	F037986	N/A	MNKELLPTELQDALTEESVGTIETALKEKVELSVEAALAGQDELYAEKLEALINQIDKDHTVKMQQIVEAVDKNNASKLGNVIKKYETELNESASTFKETLVESISNYIEEYIDEAVPMTSIEEATRNNTALTVLNNLRSTLAVDSSLMAESVKTAIVDGKNEMDELKAEIAELKKTNETLNENYNQAKSAAFLENRCAKFSGKKSAYLKKVLSDKSPRFIEENFEYTARLFDRKEKEQLEVIREEAISNRTVKADAPKTVVEEKAKPSVPSNPYLEGLDLMK*
Ga0098048_10002437	F047377	N/A	MSKETKETSTKDKIIKFIDAISGENYAVANKYLQSAVQDKIESRIRQAAEKPLF*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0098048_1000243

Overview

Ecosystem & Geography

Associated Families

Sequences