Scaffold Ga0098048

Basic Information
Taxon OID	3300006752 Open in IMG/M
Scaffold ID	Ga0098048_1001036 Open in IMG/M
Source Dataset Name	Marine viral communities from the Subarctic Pacific Ocean - 13_ETSP_OMZ_AT15268 metaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300006752 Open in IMG/M

Scaffold ID

Ga0098048_1001036 Open in IMG/M

Source Dataset Name

Marine viral communities from the Subarctic Pacific Ocean - 13_ETSP_OMZ_AT15268 metaG

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	12523
Total Scaffold Genes	28 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	22 (78.57%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (71.43%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

12523

Total Scaffold Genes

28 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

22 (78.57%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (71.43%)

Associated Families

Taxonomy
All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location Name	Pacific Ocean
Coordinates	Lat. (^o)	-14.509	Long. (^o)	-76.198	Alt. (m)	Depth (m)	48
Location on Map

Zoom:	Powered by OpenStreetMap^©

Source Dataset Sampling Location

Location Name

Pacific Ocean

Coordinates

Lat. (^o)

-14.509

Long. (^o)

-76.198

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002399	Metagenome / Metatranscriptome	563	Y
F004603	Metagenome	431	Y
F013531	Metagenome / Metatranscriptome	270	Y
F019114	Metagenome	231	Y
F048285	Metagenome	148	N
F050758	Metagenome	145	Y
F097272	Metagenome / Metatranscriptome	104	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0098048_100103610	F097272	GGAGG	MDLTEFGLDKIEAGESSGGGDRVKPGRYNFEYAGSEMIEGKNGWKALKIHFDVEGEIIKVSHAFTMAHNNDKPVEIGRESLVKMLNAMGVASMKNSDELLGKKVEGELVVGEKGYLEVKDDFGNGWKPYGSTATEDNADPKDVLPKEDKEEMFPSDVEDEDDLPF*
Ga0098048_100103615	F019114	AGGAG	MKQLEARMVEARDEFYRNKRRKGFMAFWWLDPLHYLLVLEVAIADASSKSINFEAIVKLLPNSMGSRSTVATVLDDFVARGYMCKKVGKDKRERVYTICPDSMVLMNDWFTKRDFSLKAVS*
Ga0098048_100103619	F048285	N/A	MKIDPHQLEQATAFILETNKYIYEQARKLATQHLEAEDNKNFKSRIKRYEPESKETLLHFADEITAWAECEKNYPLMDFIDKFFKIKKGY*
Ga0098048_100103621	F004603	AGGA	MIFSININGLIIDWCYTINNQEKQYHQTWIPKIADIQILTKDLNGLTVSEVRKTILEDIQPDIQMVRDNTNKKAKARRQKNV*
Ga0098048_100103622	F002399	GAGG	MSIPKTKSSKSIIGQLRKKYGLKDNTPIHKVEIAMSPKDWKAFSTALTFPNGKPTQRGK*
Ga0098048_10010367	F013531	GGAGG	MVNEKKKEQPLLSFQDKDGNPREIYERDLTDATAPLVEEISRDLGAEKQLMQAYQLATKTVHHMEAVRKNVANTLEKLEAELPPYKKPVKIEGVTKEIN*
Ga0098048_10010369	F050758	N/A	MATQQEKLIFFMRKAKILVEDCMDKNGDDDLILPLGANRVLADIVDALEEEISRADDYEEYDPG*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0098048_1001036

Overview

Ecosystem & Geography

Associated Families

Sequences