Scaffold Ga0098048

Basic Information
Taxon OID	3300006752 Open in IMG/M
Scaffold ID	Ga0098048_1001050 Open in IMG/M
Source Dataset Name	Marine viral communities from the Subarctic Pacific Ocean - 13_ETSP_OMZ_AT15268 metaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300006752 Open in IMG/M

Scaffold ID

Ga0098048_1001050 Open in IMG/M

Source Dataset Name

Marine viral communities from the Subarctic Pacific Ocean - 13_ETSP_OMZ_AT15268 metaG

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	12403
Total Scaffold Genes	32 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	20 (62.50%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Associated Families	3

Scaffold Components

Scaffold Length (bps)

12403

Total Scaffold Genes

32 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

20 (62.50%)

Novel Protein Genes

3 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (66.67%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location Name	Pacific Ocean
Coordinates	Lat. (^o)	-14.509	Long. (^o)	-76.198	Alt. (m)	Depth (m)	48
Location on Map

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Source Dataset Sampling Location

Location Name

Pacific Ocean

Coordinates

Lat. (^o)

-14.509

Long. (^o)

-76.198

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F031061	Metagenome / Metatranscriptome	183	N
F071268	Metagenome / Metatranscriptome	122	N
F080078	Metagenome / Metatranscriptome	115	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0098048_100105013	F071268	AGG	MEAHMTERNYHEDLLDEFGDDLERIFGPIESRTKGLTSLAGQPDGDLKTLLKNLKTKVIDCSGFMPKRQPFLSVVKEVLRVMRDSVDPATGKSIFYGYNLPFFIEEERVQGAEEFDWDMVYIDYNVQRNIDVAHIIKDILIEWDTKLCDPAHGRKQSDGTIDINDSQHATCSRALVGAGVCPATYIVSDAKSDNANQFGARNISNKVTEWFDDYKVRVYRGGEMIKDGFPAKAGDAPYLDMHNELAEFDAFAIATQGTAKSAGSCNRADKLFDYRGQYGQDIFKRAVRTVRTAWGNGELCHATVWGVCTLMWYYKQNHNFGASEMRKLETELVNSIQAYYPDKPNTPNRASGKDALWPQVRKLIGKTYPKELDDFRGRQESFPFMIASALRSMILNHDFYRTHPEGLSSKSLLKLDLPPVERVNGTTTEYTINHVLIQDNRIWDRLDADEYNQQDFDDADFAFEEEDEAVTV*
Ga0098048_100105014	F031061	N/A	MMQTLRLRKKMKQSQYKELLQKLGEVLSVLPGTIPVADKDLMEQQIIDKKYQIEYDSASHGGSQKLYEHFLEHRDLKWIWCHSGNRYGVDPKELYEQAPDRCPVFGTLLDYGLGKNASTTHPAFRPSMDHIEQQSRGGIKREDITNFEVMSVQANTYRNNATKMHQLYLLKYELTKS*
Ga0098048_10010506	F080078	AGGAG	MQHPIEEWIKRINAMKDLCIQAHRIRNEFAEISYKEYDYVTCKHLLEQVQSLAAGIAADKITDIKTEMDEWKNGNK*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0098048_1001050

Overview

Ecosystem & Geography

Associated Families

Sequences