NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0098048_1001086

Scaffold Ga0098048_1001086


Overview

Basic Information
Taxon OID3300006752 Open in IMG/M
Scaffold IDGa0098048_1001086 Open in IMG/M
Source Dataset NameMarine viral communities from the Subarctic Pacific Ocean - 13_ETSP_OMZ_AT15268 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)12170
Total Scaffold Genes29 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)26 (89.66%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)-14.509Long. (o)-76.198Alt. (m)Depth (m)48
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F020172Metagenome / Metatranscriptome225N
F022785Metagenome / Metatranscriptome213N
F027807Metagenome / Metatranscriptome193Y
F066736Metagenome / Metatranscriptome126Y
F087132Metagenome110N

Sequences

Protein IDFamilyRBSSequence
Ga0098048_100108620F020172GGAGGMCTKVKRAMFCTRNGYKHIENLERVCVLVGRLKGLTESEYLDLCAASKLENARALELAKHFPAR*
Ga0098048_100108628F087132GAGGVATTRRHKVRAVKDEENRRALSVRGKAEYIFDLIDEIGELDPQTDEHFQAKVQQKKTQAELRLKMLAKTLPDLKQVDADLSSSDGSMTPPTVIELVAKGLD*
Ga0098048_10010864F066736AGGMKVKEKFHNNHDGTFVVEKQFDNTPYLERTAKLRSMGAGKLPESWCVGSIPMHLLAQWMKEERISWDDLEGRKKLIMRKLNDPDFKKLRIVEGTV*
Ga0098048_10010865F022785AGGMTIERSVAKLEAQQEAMAQDVSEMKSALTSIAQTLQDLSSMEQRQVHLTETVTRAHKRIDEIQAVLKDEVKNHEKRLQSIEISIAKNQWIERIIMAGVMAVIGMWIKGGI*
Ga0098048_10010869F027807AGGAGMTKQFIEPQPIKSDLLDELDSLVGQLKNLSAYKPKPFQVIEASMDARLADFLELAEQDYIKGWTDQEEGIRHRDGMPEAYNAGYADSYDYENQGGI*
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