NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0098048_1002661

Scaffold Ga0098048_1002661


Overview

Basic Information
Taxon OID3300006752 Open in IMG/M
Scaffold IDGa0098048_1002661 Open in IMG/M
Source Dataset NameMarine viral communities from the Subarctic Pacific Ocean - 13_ETSP_OMZ_AT15268 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7453
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (78.57%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)-14.509Long. (o)-76.198Alt. (m)Depth (m)48
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F034404Metagenome175N
F040054Metagenome162N
F066271Metagenome / Metatranscriptome127N

Sequences

Protein IDFamilyRBSSequence
Ga0098048_100266111F066271AGGAGMCVQSQRQFFAERHHIVVTDKTAELLARLGRDQGVTEEDYLKHLSRHPNQDQFIAEIARHYK*
Ga0098048_100266113F040054AGGVTEKMPIISMPLPDGGQVVCRVDAITAATTNMRNADLTDVYIEVACPEGITIDVDIDSFTTSWLAALLTTIDDWRLDREVH*
Ga0098048_10026617F034404GGGGGMLQTVTIEWHPVETGSMPRNEGSYLVAFDDGAVETFPMSHQDIKRGEVRDGQTRGLYWAEGIPSPL*
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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