NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0098048_1002811

Scaffold Ga0098048_1002811


Overview

Basic Information
Taxon OID3300006752 Open in IMG/M
Scaffold IDGa0098048_1002811 Open in IMG/M
Source Dataset NameMarine viral communities from the Subarctic Pacific Ocean - 13_ETSP_OMZ_AT15268 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7219
Total Scaffold Genes16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (37.50%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)-14.509Long. (o)-76.198Alt. (m)Depth (m)48
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015933Metagenome / Metatranscriptome251Y
F020797Metagenome222Y
F025153Metagenome / Metatranscriptome203N
F079230Metagenome116N

Sequences

Protein IDFamilyRBSSequence
Ga0098048_100281112F079230N/AMIDSLIYGIVASSFVIGITRSVLLLYKRFPRLGFGLIYGSLGVKMFALGAFTLLAKPYIDNIVIYASIILSAIIYSNVYVLLKLHGK*
Ga0098048_100281113F015933N/AMKVKENIEAGMYFKFKKTFKSYTDDVYNIETSKSGFMTLHRHHIHSKTGEYIPTDLVVVRRIGEKSLDYYKHDMFGKKTRGRIHYNSIDSFFYVNKAKDGKAYTHIEKCPIPGIDAIAV*
Ga0098048_10028112F020797GAGGMIKLETILKSIPNQEIVESHLGQWKYPGRITRIPSNTITMQPDPRTGKPIEHILLIIGDQSGERQIGIPGGPNLFFPNDQSVTEYPIAKSKVYKSNQK*
Ga0098048_10028116F025153N/ALIKLKDILIEQIGFQIPGTPKQKNIGRKTRQEFAKFFNNFEAGNTKTAISGYAEQIMRSDAPDEVKEKASEILNEMEKVAIDIQDELHTRQISDDEVAETIFDYVNSEMDASDSIEFEQLLWYDNQIDSSINSGMIENAVAIMDQLLHQLEFIRGFILQEFPKISPAGFKR*
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