NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0098048_1003454

Scaffold Ga0098048_1003454


Overview

Basic Information
Taxon OID3300006752 Open in IMG/M
Scaffold IDGa0098048_1003454 Open in IMG/M
Source Dataset NameMarine viral communities from the Subarctic Pacific Ocean - 13_ETSP_OMZ_AT15268 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6402
Total Scaffold Genes16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)15 (93.75%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)-14.509Long. (o)-76.198Alt. (m)Depth (m)48
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016690Metagenome245Y
F032638Metagenome / Metatranscriptome179Y
F036313Metagenome170Y
F037936Metagenome167N

Sequences

Protein IDFamilyRBSSequence
Ga0098048_100345412F016690AGGAGMSKLDGVLIFLLGIPVTLMAWITLSEEEGYYMSEAINQGFPLGIVFVGLIGAMGLTLLMTGLFIIHHFRNN*
Ga0098048_100345414F036313GGAGMRFNYGYQDMPSDIIAKGSRYVLEKVTNLKEGSCILRYISLNDIISSYSSYEEGLKDLAKKEYDEVLLDIKEYLYIYDRVREY*
Ga0098048_10034545F032638AGAAGGMMFEAFVYICMLKDPKVCQTLKDIKGPYQTEKQCEVRAYEIAMELPDWMPEYIATRYKCEPQGTGI*
Ga0098048_10034548F037936AGGAGMARLKRKLWCKTTVKRSFGSNYKHKPLRSNWIQMVKDHDEPIEVYVSRKNELETKMFKEALTNGKLSNVGHSDNSEAIAMLDEMLNGV*
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