NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0098048_1006570

Scaffold Ga0098048_1006570


Overview

Basic Information
Taxon OID3300006752 Open in IMG/M
Scaffold IDGa0098048_1006570 Open in IMG/M
Source Dataset NameMarine viral communities from the Subarctic Pacific Ocean - 13_ETSP_OMZ_AT15268 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4360
Total Scaffold Genes15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (6.67%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)-14.509Long. (o)-76.198Alt. (m)Depth (m)48
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009491Metagenome / Metatranscriptome317Y
F058131Metagenome135N
F072842Metagenome121Y
F099111Metagenome103Y

Sequences

Protein IDFamilyRBSSequence
Ga0098048_100657010F099111N/AMTQETVERIIDETVDTIIDSIDESTVDYMFEYGDYEETDNQFLEDLKVFKTEVVKELYNRINNNK*
Ga0098048_100657011F009491N/AMSNTIKSNQIKILKINNKTYLPYQLHQLPKYFDKYTTDFFNLKGYCYISLDDVLDNNPYFNLKNFKDRLTFNKDIHYTQKR*
Ga0098048_10065705F058131AGAAGMTITFNNIGKTYKVSGDSTVKVTHHHDAIVSVCGEYFKNKYTGEWLSELEVQDYYDAQKLEEEYENKYY*
Ga0098048_10065708F072842N/AMSRIHRELLKQQLMNYDYSKTPVNKMILVELDCSSMTVQSEGPQGFTHYKTSGGSLGNLIDLMNRRVKQNPDYDLIIVDRSDKVW*
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