NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0098048_1013488

Scaffold Ga0098048_1013488


Overview

Basic Information
Taxon OID3300006752 Open in IMG/M
Scaffold IDGa0098048_1013488 Open in IMG/M
Source Dataset NameMarine viral communities from the Subarctic Pacific Ocean - 13_ETSP_OMZ_AT15268 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2834
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)14 (100.00%)
Novel Protein Genes7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)7 (100.00%)
Associated Families7

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)-14.509Long. (o)-76.198Alt. (m)Depth (m)48
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001655Metagenome / Metatranscriptome656Y
F002858Metagenome / Metatranscriptome525Y
F008883Metagenome / Metatranscriptome326Y
F023856Metagenome / Metatranscriptome208Y
F024320Metagenome / Metatranscriptome206Y
F026889Metagenome / Metatranscriptome196N
F073499Metagenome / Metatranscriptome120Y

Sequences

Protein IDFamilyRBSSequence
Ga0098048_10134881F073499AGGAGMMTDQQIEQWMRDNPWKANVIYPAGGIGFMMFIMYTCVQIIDSF
Ga0098048_101348811F008883GAGGMNIGRYTIWYNHENHVWDIYDGRKGFKYPEYTINNYSRLLCGLRDKLGFLDTDKNHRRFWRVLRWWSKLRHGRR*
Ga0098048_101348812F026889AGGAGGMNNVIEEYLALVERTVHTNDIFAYQELEQLEEQYPELADLVYQSAGPLAYDIQNNEVIS*
Ga0098048_10134882F001655GGAGGVKQPENSHTKHFGNDGPIGNDAEIIVYYEERGPAEPVLRIPFWYCKDELGLYENFEASVRRTAKALAESYTYWPDGYVHVQTIINQEYVNIL*
Ga0098048_10134883F002858AGGAGMLIDEKSIYEVTGGDYSVYCSGYTQARTVTNDIMKQDPWGGIPFVLRLDLDLSFDDKGNVVMSRQTLDKILFLASDELPQAEGDE*
Ga0098048_10134885F023856AGGAGMRCRACNRILEESELTKKDAHGDFLDLCGICLSAAASAGVDTETMEYYQYEVFTDDENYDTLY*
Ga0098048_10134886F024320AGGGGGMTFEEYEQGYYEGDSEDPSGPPEDPETHAMVEHLVEFDTEMYRLESRRKYKGLSYKHLEMLMVELHGKEWKDAL*

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