Basic Information | |
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Taxon OID | 3300006752 Open in IMG/M |
Scaffold ID | Ga0098048_1013488 Open in IMG/M |
Source Dataset Name | Marine viral communities from the Subarctic Pacific Ocean - 13_ETSP_OMZ_AT15268 metaG |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 2834 |
Total Scaffold Genes | 14 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 14 (100.00%) |
Novel Protein Genes | 7 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 7 (100.00%) |
Associated Families | 7 |
Taxonomy | |
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All Organisms → Viruses → Predicted Viral | (Source: DeepVirFinder) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico |
Source Dataset Sampling Location | ||||||||
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Location Name | Pacific Ocean | |||||||
Coordinates | Lat. (o) | -14.509 | Long. (o) | -76.198 | Alt. (m) | Depth (m) | 48 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F001655 | Metagenome / Metatranscriptome | 656 | Y |
F002858 | Metagenome / Metatranscriptome | 525 | Y |
F008883 | Metagenome / Metatranscriptome | 326 | Y |
F023856 | Metagenome / Metatranscriptome | 208 | Y |
F024320 | Metagenome / Metatranscriptome | 206 | Y |
F026889 | Metagenome / Metatranscriptome | 196 | N |
F073499 | Metagenome / Metatranscriptome | 120 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0098048_10134881 | F073499 | AGGAG | MMTDQQIEQWMRDNPWKANVIYPAGGIGFMMFIMYTCVQIIDSF |
Ga0098048_101348811 | F008883 | GAGG | MNIGRYTIWYNHENHVWDIYDGRKGFKYPEYTINNYSRLLCGLRDKLGFLDTDKNHRRFWRVLRWWSKLRHGRR* |
Ga0098048_101348812 | F026889 | AGGAGG | MNNVIEEYLALVERTVHTNDIFAYQELEQLEEQYPELADLVYQSAGPLAYDIQNNEVIS* |
Ga0098048_10134882 | F001655 | GGAGG | VKQPENSHTKHFGNDGPIGNDAEIIVYYEERGPAEPVLRIPFWYCKDELGLYENFEASVRRTAKALAESYTYWPDGYVHVQTIINQEYVNIL* |
Ga0098048_10134883 | F002858 | AGGAG | MLIDEKSIYEVTGGDYSVYCSGYTQARTVTNDIMKQDPWGGIPFVLRLDLDLSFDDKGNVVMSRQTLDKILFLASDELPQAEGDE* |
Ga0098048_10134885 | F023856 | AGGAG | MRCRACNRILEESELTKKDAHGDFLDLCGICLSAAASAGVDTETMEYYQYEVFTDDENYDTLY* |
Ga0098048_10134886 | F024320 | AGGGGG | MTFEEYEQGYYEGDSEDPSGPPEDPETHAMVEHLVEFDTEMYRLESRRKYKGLSYKHLEMLMVELHGKEWKDAL* |
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