NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0098048_1036148

Scaffold Ga0098048_1036148


Overview

Basic Information
Taxon OID3300006752 Open in IMG/M
Scaffold IDGa0098048_1036148 Open in IMG/M
Source Dataset NameMarine viral communities from the Subarctic Pacific Ocean - 13_ETSP_OMZ_AT15268 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1593
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → Viruses(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)-14.509Long. (o)-76.198Alt. (m)Depth (m)48
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F046315Metagenome151Y
F059875Metagenome133Y
F073760Metagenome120N

Sequences

Protein IDFamilyRBSSequence
Ga0098048_10361481F073760N/AMGFIVDNEITLDLYEMQSASHLGILRCLESKKYKENWGYNYKGSLNDQMAKSISGSMGEVALAKFLKIKFEYHCNVGGVPDLIFKDLRLQIRTQLPKDNNKNSLIIRPKAKPNELYIL
Ga0098048_10361482F059875N/AMKAIVLIFGVITNNGQIELVKVPNIDLANINSCEKAIEKHTKWVDNPDFDNNPLPHGFYTYKNRVIMLRYCTENGVYSG*
Ga0098048_10361483F046315N/AMNNTLNKKLLEYSLKSGYNDEFIKGYMKRNNLLPKEFTFRKESLDLILKKNNKKIIDFVRDTYSSKEQKNKLAQISKILNPKKNAPHYYTINDLAYDLSTWINNFNTSNVSITPQFFMGENVQIECIGELFGNGQIGLHKAKDRHKINIHPKYASFQAIECQTEHKRGLMMLFQPTKNIDRNVNNRSAICQDKKTKVIWFGFLEPQSNGKYNILDKSQSTGKTIGKLAENIQLSWCAEVKAAYYPNIYNI*
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Institute for Fundamental Biomedical Research
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