NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0098048_1071918

Scaffold Ga0098048_1071918


Overview

Basic Information
Taxon OID3300006752 Open in IMG/M
Scaffold IDGa0098048_1071918 Open in IMG/M
Source Dataset NameMarine viral communities from the Subarctic Pacific Ocean - 13_ETSP_OMZ_AT15268 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1065
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)-14.509Long. (o)-76.198Alt. (m)Depth (m)48
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F030067Metagenome / Metatranscriptome186N
F030293Metagenome / Metatranscriptome186N
F103165Metagenome101N

Sequences

Protein IDFamilyRBSSequence
Ga0098048_10719181F030067AGGAGMPRESWEIAHDSYYDDLEADHYDGLDDSEAWKEEEQKVIDE
Ga0098048_10719182F030293AGGAGMIVEMLDDRVSIEALGLLPHFFERSLYIEGQSIQSVADKMDDLYHYGGFVYPFEGTVDDKGTYISSSDEDDPLEPLARIDKLGFTLWIYPYAIVGLTDNKGNQKVARFD*
Ga0098048_10719183F103165AGGAMTTFYMCQITGKYFEDTLIAKTAVRVSDYPSEPSWGIYKTYDGAAILCDCDVDHAKGELNDDS*
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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