Scaffold Ga0098039_1020996

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0098039_1020996

Scaffold Ga0098039_1020996

Overview

Basic Information
Taxon OID	3300006753 Open in IMG/M
Scaffold ID	Ga0098039_1020996 Open in IMG/M
Source Dataset Name	Marine viral communities from the Subarctic Pacific Ocean - 6_ETSP_OMZ_AT15160 metaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	2352
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → unclassified Candidatus Pelagibacter → Candidatus Pelagibacter sp. TMED203	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location Name	Pacific Ocean
Coordinates	Lat. (^o)	-11.499	Long. (^o)	-81.405	Alt. (m)		Depth (m)	210
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F002415	Metagenome	561	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0098039_10209962	F002415	AGG	MALVRVTLGGKRLGYVRNNKAGSTTIINYLGQLLWNEKPTTYSGTNVQDFCGKDSYIGREKGFEAYHKELKECEIRIAVYRDPIDKIIAGFYYCQEQYPNLNNLDHFLWTYEHQLKNNYIRIHCRTNTDMLGPDPSIYTHVYNMRDIDTKLLPFLEQLGGKKIQKTRLREHGPRTITEAQEAKAKEVMAIDYKNGWCKELIPAKM*

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