NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0098044_1022272

Scaffold Ga0098044_1022272


Overview

Basic Information
Taxon OID3300006754 Open in IMG/M
Scaffold IDGa0098044_1022272 Open in IMG/M
Source Dataset NameMarine viral communities from the Subarctic Pacific Ocean - 10_ETSP_OMZ_AT15264 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2834
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)-14.205Long. (o)-77.515Alt. (m)Depth (m)78
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F067825Metagenome125Y

Sequences

Protein IDFamilyRBSSequence
Ga0098044_10222721F067825AGAAGGMAGTYVDTWSNKYALNQWVWWTERDAVGIAKFNPSTEKFTSPTTAQDGKKITLFYYKKAAQFTEPSAVGFSWTAVSDFPSQFHDYVVAKAIALGYEKKPETIQLAQYFHEKFEKGVKEGRSFAYRA

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