NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0098054_1001762

Scaffold Ga0098054_1001762


Overview

Basic Information
Taxon OID3300006789 Open in IMG/M
Scaffold IDGa0098054_1001762 Open in IMG/M
Source Dataset NameMarine viral communities from the Subarctic Pacific Ocean - 16_ETSP_OMZ_AT15313 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)10605
Total Scaffold Genes15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (80.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
unclassified Hyphomonas → Hyphomonas sp.(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)-14.51Long. (o)-76.2Alt. (m)Depth (m)45
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003361Metagenome / Metatranscriptome492Y
F006940Metagenome / Metatranscriptome361Y
F010435Metagenome / Metatranscriptome304N

Sequences

Protein IDFamilyRBSSequence
Ga0098054_100176215F010435N/AIGEVFAQVGETARDLADELKPVIFRIINEINERDLASMNPTELKGILDICYKMISQIYGLGTPQVTVNHIEQPQIKFKWDWEQDDEPDY*
Ga0098054_10017623F006940GAGGLKRLKLDDISNAPALPTKEIEISEWDATVIVTGLTKADAVKINQLSEVDSVRDEVLFEKHLLLTGLKDPEFESIEQVEEFYAKATPNIVDKILMGIYRCMAWTKEDQANIADQFPE*
Ga0098054_10017628F003361AGGMKLTLNGALDLSRAINSQSIWNKRSNDFFNKLALELKEDSLARLSLPPSPRSQAGRGNKNTGNTRRSVFTAKLGNTNRLMMSEGFKLASSSPTAPFIHGKPIFRGFSPVKKTKPFFPPYKEGSSLAKWAKRGTPKLNPFLVARAISKRGLKMKPFIGGVVYEKQKEIKAGAEDMLESIARDIARSVK*
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