NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0098054_1016502

Scaffold Ga0098054_1016502


Overview

Basic Information
Taxon OID3300006789 Open in IMG/M
Scaffold IDGa0098054_1016502 Open in IMG/M
Source Dataset NameMarine viral communities from the Subarctic Pacific Ocean - 16_ETSP_OMZ_AT15313 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2977
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (88.89%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)-14.51Long. (o)-76.2Alt. (m)Depth (m)45
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F072753Metagenome121N
F086163Metagenome111Y

Sequences

Protein IDFamilyRBSSequence
Ga0098054_10165024F072753AGGAMSSNGHIYLSKIKYDCLDFISNFIKQNKYSPTYKEIGEHFQFSRARAGAICAELFKLGLISKGKAAHRKIRMTEKQTTQIPTLNFNKEYSTMDLRR*VMSLKKVFLKQLLKL*
Ga0098054_10165029F086163N/ASYVDLVGNTHFGDIKNVFGTLIKTKSGFSYTKKKCPVVPFHSDCLQIALYQKLLPKHKPFLTYASDSDRRIFTPENCIELRPESLEHYYDELVLYQQCWEKKLELADGNIETLALLCKPDFSEIRKNGFWWKGTDPDVVKRFRGYYGF*
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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