Scaffold Ga0098074_1001756

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0098074_1001756

Scaffold Ga0098074_1001756

Overview

Basic Information
Taxon OID	3300006790 Open in IMG/M
Scaffold ID	Ga0098074_1001756 Open in IMG/M
Source Dataset Name	Marine viral communities from the Gulf of Mexico - 32_GoM_OMZ_CsCl metaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	10465
Total Scaffold Genes	20 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	15 (75.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae → unclassified Planctomycetaceae → Planctomycetaceae bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location Name	Atlantic Ocean: Gulf of Mexico
Coordinates	Lat. (^o)	28.867	Long. (^o)	-90.467	Alt. (m)		Depth (m)	18
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F043369	Metagenome	156	N
F077248	Metagenome	117	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0098074_100175611	F077248	N/A	VRGFADLETPPAFLPTVGNNPGMARSPSQRLQLFEELRDRVESGLLSGAPVVTYTVDGQTVSKEPTSVWLAELDSRIADLRRQSSGGLGASRNAVRFRQ*
Ga0098074_10017562	F043369	AGGCGG	MTTENGIDKTIVEWWQATEALTDLVPVDRVATEIMQADEAIAEDDDGDLIFDDCVVLEINTEPHWRTNSARGYQTTVTFAAMSIDDDRADLIARTIVSQWADQSFGSISDCRPDGTIERQQDEETGIYQSTATLVLNHVGI*

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