Scaffold Ga0098074_1026148

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0098074_1026148

Scaffold Ga0098074_1026148

Overview

Basic Information
Taxon OID	3300006790 Open in IMG/M
Scaffold ID	Ga0098074_1026148 Open in IMG/M
Source Dataset Name	Marine viral communities from the Gulf of Mexico - 32_GoM_OMZ_CsCl metaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1727
Total Scaffold Genes	6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	5 (83.33%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (100.00%)
Associated Families	4

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location Name	Atlantic Ocean: Gulf of Mexico
Coordinates	Lat. (^o)	28.867	Long. (^o)	-90.467	Alt. (m)		Depth (m)	18
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F035273	Metagenome	172	Y
F040601	Metagenome	161	Y
F046983	Metagenome	150	Y
F085562	Metagenome	111	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0098074_10261482	F040601	AGGAG	MANVHYIIKVIEPEKEYLKTFENGKLDNCRQLAQEYLWSCPEGTKYIYVATRIKND*
Ga0098074_10261483	F035273	AGGA	MTKTIPPQPYKVWDRQTASMTEYTPKEVYKLVVDYPGTNRQLEFIGMDRGSCILQAEVAKEESDTVMLTVSEESVTLYNKEKI*
Ga0098074_10261484	F046983	AGGAG	MKLPEYLNKESSHKTLGVNTMSLLGLSLVWGHMLNLISLWFLPLTFVCILAGFGNEIRKRD*
Ga0098074_10261485	F085562	GAGG	MDEFTKRSTAHMDPAVVKKAVSIIDKNPELKKIRSIKDGESYSEINSGVNDQQYKDNYDKIKWTKDKKTKPKFRVKVNGKYIDEEE*

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