Scaffold Ga0098074_1059211

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0098074_1059211

Scaffold Ga0098074_1059211

Overview

Basic Information
Taxon OID	3300006790 Open in IMG/M
Scaffold ID	Ga0098074_1059211 Open in IMG/M
Source Dataset Name	Marine viral communities from the Gulf of Mexico - 32_GoM_OMZ_CsCl metaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1058
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (100.00%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (100.00%)
Associated Families	3

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location Name	Atlantic Ocean: Gulf of Mexico
Coordinates	Lat. (^o)	28.867	Long. (^o)	-90.467	Alt. (m)		Depth (m)	18
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F042289	Metagenome / Metatranscriptome	158	N
F070017	Metagenome	123	N
F084122	Metagenome / Metatranscriptome	112	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0098074_10592111	F084122	AGTAGG	MFYYNVKFTNGETLVIMSDGDPVNEVPVEFQGDVIDVTTICEVAV*
Ga0098074_10592112	F042289	GAGG	MIDGIFRIEEVRADECPDEFLTRVGSANVTIWRNRLADYDGKLCFSFPYISWCDDMYVAPDEPMAMLVEETWEEASLEIEFDLMKKGLL*
Ga0098074_10592114	F070017	GAGG	MKCDFCDTPLSDERAEIYSHCSSDNCVVMWRRMRLEDFALTLVPKQGFQIVYKD

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