NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0098055_1007926

Scaffold Ga0098055_1007926


Overview

Basic Information
Taxon OID3300006793 Open in IMG/M
Scaffold IDGa0098055_1007926 Open in IMG/M
Source Dataset NameMarine viral communities from the Subarctic Pacific Ocean - 17_ETSP_OMZ_AT15314 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4929
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (36.36%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)-14.51Long. (o)-76.2Alt. (m)Depth (m)15
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009493Metagenome317N
F047926Metagenome / Metatranscriptome149N
F084220Metagenome / Metatranscriptome112N

Sequences

Protein IDFamilyRBSSequence
Ga0098055_100792610F084220AGGAMDYLSRELEDYQYYVDTTCEKCGECTDPEYYDCRCEDEEEEE*
Ga0098055_10079266F047926N/AMYIEIAKNTWVYAKDEKDAERIRAKYKGYKKKQGDLISRHFIVNYIEETNFIK*
Ga0098055_10079269F009493N/AMKKRKNKEIVLTLGKVPSLNSFYAGSHWTKRKKAKDAALETIKGQLGYNTGAPYNSFRVTAYVRYRYDLDNSIIAIKFTSDALKTLGWIKDDSPKYFRRLSMVWTEQVPKDKAEITIELSDEHPE*
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