NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0098055_1017309

Scaffold Ga0098055_1017309


Overview

Basic Information
Taxon OID3300006793 Open in IMG/M
Scaffold IDGa0098055_1017309 Open in IMG/M
Source Dataset NameMarine viral communities from the Subarctic Pacific Ocean - 17_ETSP_OMZ_AT15314 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3125
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (42.86%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)-14.51Long. (o)-76.2Alt. (m)Depth (m)15
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004990Metagenome416Y
F006892Metagenome362Y
F008915Metagenome / Metatranscriptome326Y
F046315Metagenome151Y

Sequences

Protein IDFamilyRBSSequence
Ga0098055_10173091F006892AGGMSDMGIIKPLRDRVRDLEVINSAHQKKNGQLRVEIQDKDKLIKELEEKINNPTKRMREQGEL*
Ga0098055_10173093F046315N/AMNNTLNKKLLEYSLKSGYNDEFIKGYMKRNNLLPKEFTFRKESLDLILKRYNKKIIDFVRDTYLPKEQKNKLAQISKILNPKKNAPHYYTINDLAYDLSTWINNFNTSNVSITPQFFMGENVQIECIGELFGNGQIGLHKIKDRHKINIHPKYTSFQAIECQTEHKRGLMMLFQPTKNIDRNVNNRSAICQDKKTKVIWFGFLEPQSNGKYNILDKSQSTGKTIGKLAENIQLSWCAEVKAAYYPNIYNI*
Ga0098055_10173095F008915N/AMGFIVDNEITLDLYEMQSASHLGILRCLESKKYKENWGYNYKGSLNDQMAKSISGSMGEVALAKFLKIKFEYHCNVGGVPDLIFKDLRLQIRTQLPKNNNSLIIRPKAKPNELYILVIDEAPKFKILGFVNSTYVLGQEKWKTTFGLDRPFCYSIPPDKLTPIDLLKDSTWN*
Ga0098055_10173096F004990AGGALELDDYFDPKKPCCICKNGADLRENNKYYCCDHYSLYVLGKPMSQIEKELNND*
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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