Scaffold Ga0098055_1020778

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0098055_1020778

Scaffold Ga0098055_1020778

Overview

Basic Information
Taxon OID	3300006793 Open in IMG/M
Scaffold ID	Ga0098055_1020778 Open in IMG/M
Source Dataset Name	Marine viral communities from the Subarctic Pacific Ocean - 17_ETSP_OMZ_AT15314 metaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	2811
Total Scaffold Genes	8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	5 (62.50%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → unclassified Pelagibacteraceae → Pelagibacteraceae bacterium TMED287	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location Name	Pacific Ocean
Coordinates	Lat. (^o)	-14.51	Long. (^o)	-76.2	Alt. (m)		Depth (m)	15
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F043964	Metagenome / Metatranscriptome	155	N
F097449	Metagenome / Metatranscriptome	104	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0098055_10207781	F043964	N/A	MFIIKNTVTDRIHKEPSRARTGYRGGEYATERAAKAGITRTLKHYAKALEQVSERVAAGEPEYMAPLYNDYREVTEPCLNRQWVNDPNTYEVMTMEAYGDPQQTDTGVCPYNGETITRTISVNQAWTHMDPLCESHWTR*
Ga0098055_10207782	F097449	GGA	MLTTKQYRTVFNGIANDLGIDWLGTWTDDTLGRGYTREGEHLRTVTHSIGHNAPRVVQQFIKRLRASVGPEHDVRLTSYYIKATCIIHDDIWHSRENAE*

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