NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0098055_1054607

Scaffold Ga0098055_1054607


Overview

Basic Information
Taxon OID3300006793 Open in IMG/M
Scaffold IDGa0098055_1054607 Open in IMG/M
Source Dataset NameMarine viral communities from the Subarctic Pacific Ocean - 17_ETSP_OMZ_AT15314 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1604
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)-14.51Long. (o)-76.2Alt. (m)Depth (m)15
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005491Metagenome / Metatranscriptome399Y
F011658Metagenome / Metatranscriptome288Y
F070571Metagenome / Metatranscriptome123Y

Sequences

Protein IDFamilyRBSSequence
Ga0098055_10546073F005491N/AMSAFYKDTRFEGKLVRLEDVIDEVYNRALETIDDSLYELLNDKEDDEFYMDYKEAFGHVVEELQKFHNNEE*
Ga0098055_10546074F070571N/AMTKEELQVKIGTIESMIADSNVDITKYTEQLEQYKKQHADLSKPKLTPQQYDKLQFLVEEAIEGFDFDDLDNYSIDYGIDYDNRVTCESFCFDNTDEVVRNIMQNVENMFAEIKEHDNQLNQE*
Ga0098055_10546075F011658N/AMSTLYDKLKPEIKQELLKQEELYPTLVKDVKIALKENYLWSHLSIGQARELVNFTSISLGSMSSYDWSYGEKFLICED*
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