NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0066659_10008452

Scaffold Ga0066659_10008452


Overview

Basic Information
Taxon OID3300006797 Open in IMG/M
Scaffold IDGa0066659_10008452 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_108
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5379
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira → Nitrospira defluvii(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F061740Metagenome131N
F085506Metagenome / Metatranscriptome111N

Sequences

Protein IDFamilyRBSSequence
Ga0066659_100084521F085506N/AASRTVYQDDTLRVFLEADPTVTSGRSVPNDHPVSLDTTQLSLLLRGVEVERPPGLLKSLVSGPTREAAFSKDEIMALAPQLKEAFAQASSKERVSFALMRSSSGQGSELTAGAVWVRGRGFHFALSRYRSPTDKKWAGIPGPYDSAFARGRLTPPDVRPDFTVLFSLSSYVIKQEPSLATEMFASPETELVIDYQRFFADARKSPEKTLVAAPTEDRRGAMGSSVTAVAPAGEGGMPDRSDRLAESQATVRALTDRVNRLESQVSDLLDIVKRLTSSLEESRRALAEKDKESRTLQSAPGAPK*
Ga0066659_100084523F061740N/AMSRFKARVGVIFLALLSQNASARADHIQVPPYRGMETTESRTVTTNPLSGMLLYRIEYKSNLAVAYRICYDQEEHFPFAIADFAHDALYIDRDRDGHVDEVIAQAHLEKRSLTDDLPRCPPKPEKP*
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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