 |
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300006802 Open in IMG/M |
| Scaffold ID | Ga0070749_10028747 Open in IMG/M |
| Source Dataset Name | Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_18 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 3481 |
| Total Scaffold Genes | 6 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 3 (50.00%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → Candidatus Endolissoclinum → unclassified Candidatus Endolissoclinum → Candidatus Endolissoclinum sp. TMED37 | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Delaware Bay | |||||||
| Coordinates | Lat. (o) | 39.12 | Long. (o) | -75.25 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F039049 | Metagenome / Metatranscriptome | 164 | N |
| F040080 | Metagenome | 162 | Y |
| F052272 | Metagenome / Metatranscriptome | 143 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0070749_100287472 | F039049 | N/A | MNLLPQKSKKRELSDQQQSFLTALFENGGNFSRACEVAGYSQGSIGYLKESLADEIIDGARNILAGGAIKAANKLVNTIDSPEIERGDNIRLQAAESLLNRVGLGKQETHNVNVQAIHGVVLLPPKKEMVVDHVE* |
| Ga0070749_100287474 | F052272 | GGA | MKTQTTLNFTAEQLNELKRIVDTVGWSTRDEKTGHIDAYVSEQRVKFAKDLAGLLGRMDTAAIVGSSEGI* |
| Ga0070749_100287475 | F040080 | AGCAGG | MKTIETFKNDLGTLRTDLNATTYRVEKVQELLSDLVEKLDGLYDQSVSNKDQAVDLVRAADDLKPRQEDRRVFSSHYRMLAILHAYGAMHREHVAKLLGVKEQTVQQMLHVCRHRGLAHLKTRKGVVRLQSLADGVSDNTNFTI* |
| ⦗Top⦘ |
|
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |