Scaffold Ga0070749_10388816

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

x

This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK

Scaffold Ga0070749_10388816

Scaffold Ga0070749_10388816

Overview

Basic Information
Taxon OID	3300006802 Open in IMG/M
Scaffold ID	Ga0070749_10388816 Open in IMG/M
Source Dataset Name	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_18
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	771
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (25.00%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (25.00%)
Associated Families	4

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location Name	USA: Delaware Bay
Coordinates	Lat. (^o)	39.12	Long. (^o)	-75.25	Alt. (m)		Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009459	Metagenome	317	Y
F022875	Metagenome	212	N
F044460	Metagenome / Metatranscriptome	154	N
F048912	Metagenome	147	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0070749_103888161	F044460	N/A	MEETDEHEVLEQLDESISALVTKGYDFFWSNNELCYDSELKVVRSDRPRVRPPTWFC
Ga0070749_103888162	F048912	N/A	MRDYDSWLTSFLDYEDDDGLTDEERQELKDLYEAWVIDQYEQTLD*
Ga0070749_103888163	F009459	GGA	MSREITLEPTIMIEELMYYIHQNEMGGDFIDPDNRFFPLYLELQKLLDHEQQKKYDLYVSVKNDETK*
Ga0070749_103888164	F022875	N/A	PMKLNLTDDIKENIRVRAKQHINSTDPSTDHWDSIETPDGFVDFNIWQDDEEWIVTCYDTYHSTDDGCVHTDTSTFKRIAL*

© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.