Scaffold Ga0079220_11057526

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

x

This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK

Scaffold Ga0079220_11057526

Scaffold Ga0079220_11057526

Overview

Basic Information
Taxon OID	3300006806 Open in IMG/M
Scaffold ID	Ga0079220_11057526 Open in IMG/M
Source Dataset Name	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	652
Total Scaffold Genes	1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanocellales → Methanocellaceae → Methanocella → Methanocella paludicola	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil → Agricultural Soil Microbial Communities From Utah And Georgia To Study Nitrogen Management

Source Dataset Sampling Location
Location Name	USA: Georgia
Coordinates	Lat. (^o)	33.8834	Long. (^o)	-83.4195	Alt. (m)		Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F027031	Metagenome	196	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0079220_110575261	F027031	N/A	RARRVMGREERDVIMGVIDRLPSTVLDWSSGLTTLDPVDIIEVRRPVTSLSSSGGGRWWVGPREVRPELDEVHATGGRYDSIYALWPCEPGVPQCGWGCTQGASDATLGAGFSSISTDHWHTLANDPDPEQGYVHEWLHQVEGLYRGLGLSESELPSLHDAAQFTSTRPVDEAPFGRSYGEYEAGSRTWSPWYRDYMTGRLRPADGSGLPLVDGPIG

© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.