NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0070754_10074456

Scaffold Ga0070754_10074456


Overview

Basic Information
Taxon OID3300006810 Open in IMG/M
Scaffold IDGa0070754_10074456 Open in IMG/M
Source Dataset NameAqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Sep_01
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1727
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location NameUSA: Delaware Bay
CoordinatesLat. (o)39.12Long. (o)-75.25Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F059875Metagenome133Y
F073760Metagenome120N
F092873Metagenome107N

Sequences

Protein IDFamilyRBSSequence
Ga0070754_100744562F092873GAGMNNILNKKFIEIASKSGYKTDFVERFMIKKELATKTFTFNRPSLEKLLKKNNKKISDFIKDTYLPKEQKNKFAQISKILNPKKNAPKYYTENDLAFDLSHWFNSFANGDILVSPEYFIGHTIEIPVVGSLYGNGQVGFHKGKEINKINIHPKYGNCHAIESKQGSSMGLMRLFIPNKNVDRNANHRFSILQDRKSKIIWLGYIEPQSNGKYNILDRSYSTGKIIGNLVENISLSWSSEIKALYYPNFYNS*
Ga0070754_100744563F059875N/AMKVLVLIFGVITNDGQIDLVKVPKFELKNINSCEKAIDTHTKWVDNPYFGQNDLPFGFYTYKNRVVMLQYCVLKEVESE*
Ga0070754_100744564F073760AGGAGGVNNEVNLDLYEMQSAAHLGILRCLESKKHKESWGYNYKGSLNDQMAKSISGAMGEVAASKFLNIKFEYHCNVGGVPDLVFKDLKLQVRTQIPKNNNSLIIRPKAKPDEFYILVIDEA
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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