NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0101790_101204

Scaffold Ga0101790_101204


Overview

Basic Information
Taxon OID3300006840 Open in IMG/M
Scaffold IDGa0101790_101204 Open in IMG/M
Source Dataset NameAnaerobic bioreactor microbial communities from Canach, Luxembourg
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCentre de Recherche Public Gabriel Lippmann
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)15486
Total Scaffold Genes31 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)30 (96.77%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Bioreactor → Continuous Culture → Marine Sediment Inoculum → Unclassified → Anaerobic Reactor → Anaerobic Bioreactor Microbial Communities From Different Locations In Luxembourg

Source Dataset Sampling Location
Location NameCanach, Luxembourg
CoordinatesLat. (o)49.609581Long. (o)6.325797Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F020859Metagenome / Metatranscriptome221Y
F103107Metagenome / Metatranscriptome101Y

Sequences

Protein IDFamilyRBSSequence
Ga0101790_10120427F103107AGGAGGVNKIVYWTDEKTGACVELAGTKWDGDLSDEELLAKAREVAEQEDMDLSYGEIVIEIEEGSFI*
Ga0101790_1012045F020859AGGAGGMKKIIAREVNPAHVNFSYYFDDDGLKSIGGENCAVYIVSGGRRRYGGFNMEEYEEIEEKAKAIIDGFRDVSAKWPYGYATYKEVMEDNAIPYTSRKCHLLKEWAKYANPHDTSDIAEFLTITTGEEWEVKSFTGYSQGDYCEVVYCVNHYTPERINEIGELWLGCGTEFCIEGCYGYFVPESIRWREGETLRKYLADSYGCEPEELEIYLYDGEHIVTDYRIME*
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